Long-term support projects

Click on a project for further details and links to publications, analysis tools and data.

  • A new diagnostic test for rheumatoid arthritis PI: Rikard Holmdahl (KI)
    Application round: Oct 2018
    Subject: Molecular Medicine & Biomarkers

    Co-applicants: Inger Gjertsson (GU)
  • Analysis of the nuclear and cytosolic transcriptomes in human brain PI: Lars Feuk (UU)
  • Baltic sea CRISPR dynamics PI: Anders Andersson (KTH)
    Application round: Feb 2016
    Subject: Biodiversity
  • Chromatin dynamics and inheritance PI: Simon Elsässer (KI)
    Application round: May 2017
    Subject: Cell and Developmental Biology
  • Clonal evolution from diagnosis to relapse in acute lymphoblastic leukemia PI: Ann-Christine Syvänen (UU)
    Application round: Oct 2016
    Subject: Cancer Biology
  • Decoding the birth of hair follicles by single-cell RNA-seq PI: Maria Kasper (KI)
    Application round: Sep 2017
    Subject: Cell and Developmental Biology
  • Defining cell heterogeneity and therapy resistance in neuroblastoma PI: Per Kogner (KI)
    Application round: Oct 2018
    Subject: Cancer Biology

    Co-applicants: Ninib Baryawno (KI)
  • Environmental genomics in the Northern krill PI: Andreas Wallberg (UU)
    Application round: Oct 2018
    Subject: Evolutionary Biology/Genetics
  • Epigenetics of acute myeloid leukemia PI: Karl Ekwall (KI)
    Application round: Nov 2014
    Subject: Cancer Biology
  • Evolution of human skeletal muscle metabolism PI: Ola Hansson (LU)
    Application round: Sep 2017
    Subject: Evolutionary Biology/Genetics
  • Evolution of sex chromosomes PI: Bengt Hansson (LU)
    Application round: Oct 2016
    Subject: Evolutionary Biology/Genetics
  • Exploring sex-biased gene expression in willows PI: Sofia Berlin Kolm (SLU)
    Application round: Oct 2015
    Subject: Evolutionary Biology/Genetics
  • Fat heterogeneity PI: Kirsty Spalding (KI)
    Application round: Jun 2016
    Subject: Cell and Developmental Biology
  • Fate mapping of human cells PI: Jonas Frisén (KI)
  • Finding causal variants within schizophrenia risk loci PI: Patrick Sullivan (KI)
    Application round: Oct 2016
    Subject: Human Genetics
  • From single nuclei genomes to the arbuscular mycorrhizal tree of life PI: Anna Rosling Larsson (UU)
    Application round: May 2018
    Subject: Evolutionary Biology/Genetics
  • Gene regulatory networks in β-cells PI: Olov Andersson (KI)
    Application round: Sep 2017
    Subject: Cell and Developmental Biology
  • Genetic associations of serum lipidome in a prospective cohort PI: Olle Melander (LU)
  • Genome-wide consequences of population declines in endangered species PI: Love Dalén (NRM)
    Application round: Sep 2017
    Subject: Evolutionary Biology/Genetics

    Co-applicants: Johanna von Seth (SU), Nicolas Dussex (NRM)
  • Genome-wide screen for inhibitors of lysosomal damage-induced cell death PI: Sonja Aits (LU)
    Application round: Oct 2018
    Subject: Cell and Developmental Biology
  • Genomic analysis of adaptation to climate change in two bumblebee species PI: Matthew Webster (UU)
    Application round: Sep 2017
    Subject: Evolutionary Biology/Genetics
  • Genomic analysis of pediatric solid tumors PI: Monica Nistér (KI)
    Application round: May 2017
    Subject: Cancer Biology

    Co-applicants: Teresita Diaz de Ståhl (KI), Johanna Sandgren (KI), Maxime Garcia (KI), Gustaf Ljungman (UU)
  • Genomic dynamics over space and time in salmonid metapopulations PI: Linda Laikre (SU)
    Application round: May 2018
    Subject: Evolutionary Biology/Genetics
  • Human structural genetic variation PI: Magnus Nordenskjöld (KI)
  • Identification of functionally perturbing non-coding mutations PI: Robert Måsson (KI)
    Application round: Jan 2017
    Subject: Cancer Biology
  • Impacts of nitrogen fertilisation on forest belowground fungal communities PI: Nathaniel Street (UmU)
    Application round: Jan 2018
    Subject: Biodiversity

    Co-applicants: Vaughan Hurry (SLU)
  • Imputing genetic variants in a high kinship human cohort PI: Åsa Johansson (UU)
    Application round: Jun 2015
    Subject: Human Genetics
  • Insect aging omics PI: Christopher Wheat (SU)
  • Integrated multiomics analysis of pediatric acute myeloid leukemia PI: Linda Holmfeldt (UU)
    Application round: Jan 2018
    Subject: Cancer Biology
  • Interneuronal populations in locomotor networks PI: Ole Kiehn (KI)
    Application round: Feb 2014
    Subject: Cell and Developmental Biology
  • Intragenomic conflict PI: Hanna Johannesson (UU)
    Application round: Jan 2017
    Subject: Evolutionary Biology/Genetics
  • Is DNA methylation heritable in clonal water fleas? PI: Tobias Uller (LU)
    Application round: Jan 2018
    Subject: Evolutionary Biology/Genetics

    Co-applicants: Reinder Radersma (LU)
  • Leptidea butterfly genomics PI: Niclas Backström (UU)
  • Methods for multiplex protein analysis PI: Ulf Landegren (UU)
    Application round: May 2017
    Subject: New Technology Development

    Co-applicants: Caroline Gallant (UU)
  • Microbes in the deep PI: Mark Dopson (LNU)
  • Mitochondrial dysfunction in Parkinson's disease PI: Nils-Göran Larsson (KI)
    Application round: May 2017
    Subject: Molecular Medicine & Biomarkers
  • Multi-level omics profiling of the yeast cell cycle PI: Jens Nielsen (CTH)
    Application round: Jun 2016
    Subject: Cell and Developmental Biology
  • Mutation calling to enable sensitive proteogenomics for cancer immunotherapy PI: Janne Lehtiö (KI)
    Application round: Oct 2018
    Subject: New Technology Development

    Co-applicants: Rui Branca (KI)
  • Neo-antigens in melanoma PI: Göran Jönsson (LU)
  • Novel regulatory patterns of biofilm formation in Candida parapsilosis PI: Ute Römling (KI)
    Application round: May 2018
    Subject: Cell and Developmental Biology
  • Omics interplay in cardiometabolic disease PI: Marju Orho-Melander (LU)
    Application round: Jan 2017
    Subject: Molecular Medicine & Biomarkers
  • Omics of sleep loss PI: Christian Benedict (UU)
  • Origin and heterogeneity of the most primitive nervous system PI: Igor Adameyko (KI)
  • Pericyte fibrosis PI: Christian Göritz (KI)
  • Personalized profiling of adaptive immune genes PI: Gunilla Karlsson Hedestam (KI)
    Application round: May 2017
    Subject: New Technology Development
  • Pneumonial metagenomics, metatranscriptomics and metabolomics PI: Birgitta Henriques-Normark (KI)
    Application round: Jun 2016
    Subject: Molecular Medicine & Biomarkers
  • Preimplantation stress: programming our future generations PI: Sophie Petropoulos (KI)
    Application round: Jan 2017
    Subject: Cell and Developmental Biology
  • Prophylactic probiotics to extremely low birth weight preterm infants PI: Thomas Abrahamsson (LiU)
    Application round: Oct 2018
    Subject: Molecular Medicine & Biomarkers

    Co-applicants: Maria Jenmalm (LiU)
  • Redefining the molecular landscape of triple-negative breast cancer PI: Johan Staaf (LU)
    Application round: Oct 2018
    Subject: Cancer Biology
  • Reproductive isolation and the evolution of key innovations PI: Charlie Cornwallis (LU)
    Application round: Feb 2015
    Subject: Evolutionary Biology/Genetics
  • Respiratory genomics in flies and mammals PI: Christos Samakovlis (SU)
    Application round: Nov 2014
    Subject: Cell and Developmental Biology
  • SCAPIS human wellness profiling PI: Mathias Uhlén (KTH)
    Application round: Feb 2016
    Subject: Cell and Developmental Biology
  • Sex-biased gene expression and its dependence on condition PI: Urban Friberg (LiU)
    Application round: May 2018
    Subject: Evolutionary Biology/Genetics
  • Sex-limited experimental evolution of novel sex chromosomes PI: Jessica Abbott (LU)
    Application round: May 2018
    Subject: Evolutionary Biology/Genetics
  • Single cell profiling of cell types and lineages in the mouse brain PI: Jonas Frisén (KI)
    Application round: Jan 2018
    Subject: New Technology Development
  • Single-cell gene expression analysis of limb regeneration PI: Andras Simon (KI)
    Application round: Jun 2015
    Subject: Cell and Developmental Biology
  • Spatially resolved gene expression analysis in human developing heart tissue PI: Matthias Corbascio (KI)
    Application round: Oct 2016
    Subject: Cell and Developmental Biology
  • Stem cell mutational signatures PI: Maria Eriksson (KI)
    Application round: Sep 2017
    Subject: Human Genetics
  • Symbiont-induced host speciation in insects PI: Lisa Klasson (UU)
    Application round: Jan 2017
    Subject: Evolutionary Biology/Genetics
  • The basis of inherited migratory directions in the Australian bogong moth PI: Eric Warrant (LU)
    Application round: May 2018
    Subject: Evolutionary Biology/Genetics
  • The epigenetic landscape in MLL-rearranged leukemia PI: Anna Andersson (LU)
    Application round: Feb 2016
    Subject: Cancer Biology
  • The genomics and transcriptomics behind Nature's high performance material PI: Anna Rising (KI)
    Application round: Oct 2018
    Subject: Cell and Developmental Biology
  • The transcriptional heterogeneity of human intestinal innate lymphoid cells PI: Jenny Mjösberg (KI)
    Application round: Sep 2017
    Subject: Cell and Developmental Biology
  • Transcriptional profiling of mononuclear phagocytes in sarcoidosis patients PI: Anna Smed Sörensen (KI)
    Application round: May 2018
    Subject: Molecular Medicine & Biomarkers
  • Transcriptome analysis of memory T cells during influenza virus challenge PI: Nils Lycke (GU)
    Application round: Jan 2018
    Subject: Cell and Developmental Biology
  • Understanding epigenetics of type 2 diabetes by WGBS PI: Charlotte Ling (LU)
    Application round: Jan 2018
    Subject: Molecular Medicine & Biomarkers

    Co-applicants: Alexander Perfilyev (LU)
  • Understanding the tissue-material interface during wound healing PI: Molly Stevens (KI)
    Application round: Jan 2018
    Subject: Molecular Medicine & Biomarkers

    Co-applicants: Alessondra Speidel (KI), Annina Steinbach (KI)
  • WGS and RNA-seq in chronic lymphocytic leukemia subsets PI: Richard Rosenquist (UU)
    Application round: Jun 2016
    Subject: Cancer Biology
  • Whole genome sequencing of neuroblastoma PI: Tommy Martinsson (GU)
  • Whole genome sequencing to identify genetic causes of adverse drug reactions PI: Mia Wadelius (UU)
    Application round: Sep 2017
    Subject: Human Genetics
  • Whole-genome sequencing of 1000 colorectal cancers PI: Tobias Sjöblom (UU)
    Application round: Oct 2018
    Subject: Cancer Biology

    Co-applicants: Mathias Uhlén (KTH)
  • Why such high genetic diversity in songbird immunity? PI: Helena Westerdahl (LU)
    Application round: Jun 2016
    Subject: Evolutionary Biology/Genetics

Click on a project for further details and links to publications, analysis tools and data.